The seasonal development dynamics of the yak hair cycle transcriptome

Abstract

Background Mammalian hair play an important role in mammals’ ability to adapt to changing climatic environments. The seasonal circulation of yak hair helps them adapt to high altitude but the regulation mechanisms of the proliferation and differentiation of hair follicles (HFs) cells during development are still unknown. Here, using time series data for transcriptome and hormone contents, we systematically analyzed the mechanism regulating the periodic expression of hair development in the yak and reviewed how different combinations of genetic pathways regulate HFs development and cycling. Results This study used high-throughput RNA sequencing to provide a detailed description of global gene expression in 15 samples from five developmental time points during the yak hair cycle. According to clustering analysis, we found that these 15 samples could be significantly grouped into three phases, which represent different developmental periods in the hair cycle. A total of 2316 genes were identified in these three consecutive developmental periods and their expression patterns could be divided into 9 clusters. In the anagen, genes involved in activating hair follicle growth are highly expressed, such as the WNT pathway, FGF pathway, and some genes related to hair follicle differentiation. In the catagen, genes that inhibit differentiation and promote hair follicle cell apoptosis are highly expressed, such as BMP4, and Wise. In the telogen, genes that inhibit hair follicle activity are highly expressed, such as DKK1 and BMP1. Through co-expression analysis, we revealed a number of modular hub genes highly associated with hormones, such as SLF2, BOP1 and DPP8. They may play unique roles in hormonal regulation of events associated with the hair cycle. Conclusions Our results revealed the expression pattern and molecular mechanisms of the seasonal hair cycle in the yak. The findings will be valuable in further understanding the alpine adaptation mechanism in the yak, which is important in order to make full use of yak hair resources and promote the economic development of pastoral plateau areas.

Genome-wide detection and sequence conservation analysis of long non-coding RNA during hair follicle cycle of yak

“…To further screen the DELs that are more likely to affect the HFs cycle in yak, 93 differently expressed protein coding genes (DEGs) paired with 110 DELs were obtained by combining the present data with our previous mRNA data on the HFs cycle in yak [43]. The detailed information on these DELs and DEGs were presented in Additional file 4.…”

Genome-wide detection and sequence conservation analysis of long non-coding RNA during hair follicle cycle of yak

“…To further screen the DELs that are more likely to affect the HFs cycle in yak, 93 differently expressed protein coding genes (DEGs) paired with 110 DELs were obtained by combining the present data with our previous mRNA data on the HFs cycle in yak [43]. The detailed information on these DELs and DEGs were presented in Additional le 4.…”

Genome-wide detection and sequence conservation analysis of long non-coding RNA during hair follicle cycle of yak

“…To further screen the DELs that are more likely to affect the HFs cycle in yak, 93 differently expressed protein coding genes (DEGs) paired with 110 DELs were obtained by combining the present data with previous mRNA sequencing data on the HFs cycle in yak [43]. The detailed information on these DELs and DEGs were presented in Additional le 4.…”