In the mouse-human hybrid cell line SCC 16-5, chromosome 21 is the only human chromosome present. Fractions highly enriched for this chromosome were obtained by applying the chromosome velocity sedimentation technique to this cell line, DNA prepared from these chromosomal fractions was partially digested with Mbo I, size fractionated on an NaCl gradient, and cloned in the EMBL-3 phage vector.The phage library thus prepared was highly enriched for human chromosome 21-specific recombinant DNA sequences 15-20 kb long. Of the approximately 21,000 phage clones obtained, at least 99% were recombinant. Following phage plaque filter hybridization and Southern blotting, it was found that half of the recombinants were positive for human repetitive DNA. Atmost all phages harbored highly or middle repetitive human or mouse DNA sequences owing to the large size of ttie recombinant inserts. In this library, the human chromosome 21 is represented approximately four times. All human recombinants studied thus far contained DNA inserts originating from chromosome 21 only. The employed cloning strategy is discussed with regard to utility, purity, quality, and completeness of chromosome-specific recombinant DNA libraries.Key terms: Chromosome velocity sedimentation, chromosome sorting, hybrid cells, DNA c 1 on i n g A direct approach to the purification or enrichment of chromosomespecific DNA sequences involves the physical isolation of the desired chromosomes by fluorescence-activated flow sorting (6,22,24). In this way, several chromosome-specific or enriched recombinant DNA libraries have been constructed using human or rodent cell lines with normal and abnormal chromosome numbers (7,10,18,19) or cell lines with marker chromosomes (8,21,23). Improvements in the preparation of metaphase chromosome samples coupled with advances in flow instrumentation permit the isolation of highly purified chromosomal fractions (22). However, flow sorting is very limited in providing large quantities of chromosomes. As a consequence, nearly all chromosomespecific or -enriched recombinant DNA libraries have been made from DNA digested to completion. This approach cannot provide complete representation of chromosome-specific DNA sequences because of the limited acceptance range of the cloning vector and the spacing of the restriction enzyme recognition sites. This problem can perhaps be obviated by constructing separate chromosome-specific libraries from total restriction digests of DNA by using combinations of vectors with different acceptance ranges and by using vectors that accept different restriction endonuclease cleavage fragments. Alternatively, if sufficient DNA is available, chromosomespecific recombinant DNA libraries may be constructed from partially digested (20) or mechanically sheared DNA, thus providing a more complete representation of the DNA sequences on a chromosome.In this paper, we describe the construction and analysis of a human chromosome 21-specific recombinant
In Situ HybridizationSubconiluent cultures were treated with v...