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It is demonstrated that closely related viruses within the family Betaflexiviridae are associated with a number of diseases that affect sweet cherry (Prunus avium) and other Prunus spp. Cherry rusty mottle-associated virus (CRMaV) is correlated with the appearance of cherry rusty mottle disease (CRMD), and Cherry twisted leaf-associated virus (CTLaV) is linked to cherry twisted leaf disease (CTLD) and apricot ringpox disease (ARPD). Comprehensive analysis of previously reported full genomic sequences plus those determined in this study representing isolates of CTLaV, CRMaV, Cherry green ring mottle virus, and Cherry necrotic rusty mottle virus revealed segregation of sequences into four clades corresponding to distinct virus species. High-throughput sequencing of RNA from representative source trees for CRMD, CTLD, and ARPD did not reveal additional unique virus sequences that might be associated with these diseases, thereby further substantiating the association of CRMaV and CTLaV with CRMD and CTLD or ARPD, respectively. Based on comparison of the nucleotide and amino acid sequence identity values, phylogenetic relationships with other triple-gene block-coding viruses within the family Betaflexiviridae, genome organization, and natural host range, a new genus (Robigovirus) is suggested.

Symptoms of leaf vein yellowing and bush decline in blackberry were attributed to infection by a novel crinivirus named Blackberry yellow vein associated virus (BYVaV). The disease is an emerging threat to blackberry production because it can cause substantial yield loss. The objective of this study was to identify the source and means of spread of BYVaV. A survey of blackberry plants for BYVaV from wild, cultivated, and nursery stocks was conducted. Insect traps and healthy blackberry sentinel plants were placed among symptomatic plants in a production field throughout two growing seasons to monitor the occurrence of potential vectors and virus spread. Virus indicator plants were grafted with BYVaV-infected blackberry because this virus was latent in some blackberry cultivars, but indicator plants failed to express symptoms when infected with BYVaV. Reverse-transcription polymerase chain reaction detection revealed the occurrence of BYVaV in blackberry nurseries in the United States, in production fields in Arkansas, South Carolina, and North Carolina, and in wild blackberry populations in Arkansas. Whiteflies (Trialeurodes packardii and T. ruborum), potential vectors of BYVaV, were observed on sticky traps placed in blackberry fields and were found colonizing blackberry plants; however, transmission studies failed to produce whitefly-mediated transmission of BYVaV. Further understanding of the disease etiology is needed to devise viable management strategies for this disease.

Blackberry yellow vein disease (BYVD) poses a new threat to the blackberry industry in the United States. Blackberry yellow vein associated virus (BYVaV) was originally thought to be the sole cause of this disease. However, BYVaV has been found in several asymptomatic blackberry cultivars. An unusual member of the family Potyviridae was identified recently from symptomatic plants and named Blackberry virus Y (BVY). BVY has been shown to spread in the field and cause BYVD when co-infected with BYVaV. Both viruses are asymptomatic in single infections but are readily detectable in asymptomatic plants by reverse transcription–polymerase chain reaction (RT-PCR). However, in mixed infections, the titer of BYVaV is repressed, sometimes to levels undetectable by RT-PCR, while the concentration of BVY is increased several fold. Electron microscopy revealed a variety of viral inclusions in symptomatic leaf samples, but none could be found in single infections with either BVY or BYVaV. Although BYVaV has been consistently associated with BYVD in different geographical regions, the detection of BVY has thus far been restricted to northwest Arkansas. It has been hypothesized that BYVaV is the synergistic determinant of BYVD that causes symptoms in different cultivars at various locations during co-infection with other viruses.

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