Tick-borne encephalitis is a transmissible natural-focal disease which occurs in some countries across Europe and Asia. The observation of epidemic process dynamics of TBVE in Russia covers an 80-year long period and it’s the world longest. The existence of extensive records, various data from different geographic and administrative areas opens the way to interpretation of certain ecological and social factors and their role in the regional epidemiological situation. The targeted measures against TBVE are feasible only when the role of basic predictors of decreasing incidence is defined. Objective: analysis of TBVE incidence among the population and preventive measures in the Districts and constituent entities of Russia in 2019, forecast for 2020 based on the data collected in 2010–2019. The article shows a continued downward trend in TBVE incidence, noted in recent years. However, cases of infection were registered in 6 Federal Districts and 46 regions just like in the past. The number of patients amounted to 1559 (the incidence rate is 1.02 per 100000 people), of whom 23 have died. The rate of seeking medical care among those who were bitten by ticks increased. Specific preventive measures against TBVE haven’t significantly changed by volume and focus compared to the previous period. The scope of acaricide treatments has declined. The article also presents the data concerning TBVE carriers’ infection rate, and the laboratory study results in districts and regions across the country. It is recognized that the epidemiological situation on TBVE in Russia is still unfavorable. It requires the constant attention of health facilities and Rospotrebnadzor and management decisions aimed at further decrease in the incidence by improved prevention especially in the regions with high TBVE incidence.

The Irkutsk region is the unique territory where all known subtypes of tick-borne encephalitis virus (TBEV) circulate. In the last years, the phenomenon of changes in TBEV subtypes (substitution of the Far-Eastern subtype by the Siberian one) was noted in some regions of the Russian Federation. The results of individual investigation of 11522 Ixodes persulcatus ticks and brain specimens from 81 small mammals collected in natural foci of the Irkutsk region during 2006-2014 are presented in the article. More than 60 TBEV strains have been isolated and studied by virological methods; E gene fragments (1193 b.p.) of 68 isolates have been typed. The majority of the strains (irrespective of subtype) were of high virulence for laboratory mice (LM) in case of both intracerebral and subcutaneous inoculation of virus. All isolates from warm-blooded small mammals and humans were of high virulence for LM, but placed in the same clusters of the phylogenetic tree with ticks collected in the same area. Tick-borne strains of different virulence also did not form separate clusters on the tree. Phylogenetic analysis showed that modern TBEV genotypic landscape of the studied territory is changing toward absolute predominance of the Siberian subtype (94.1%). This subtype is represented by two groups with prototype strains “Zausaev” and “Vasilchenko”. The “Vasilchenko” group of strains is spread on the whole territory under study; the strains of “Zausaev” group were isolated previously in the Irkutsk suburbs. The European subtype of TBEV circulates in natural foci of Pribaikalie permanently (at least 5% of the random sampling); the strains are of high virulence for LM. The Far-Eastern TBEV subtype was not found within the group of isolates collected in 20062014. The phylogenetic relationship of the strains under study had a higher correlation with the place of isolation than with the year or source.

No abstract

Ixodid ticks (n=3714) from natural foci of Baikal Region (Irkutsk Region and Republic of Buryatia) have been examined for pathogenic Borrelia DNA during 2013-2010. On average 40.9 % of the samples were positive for Borrelia markers during the survey period; the range of variantion was – 32–55 %. The increasing of infection rate in ticks is traced in multi-year trends. During the ticks’ activity season, maximal infection rates have been noted at the end of the season (60 %), minimal – at the very beginning of the season (28,6 %) and on the peak of vectors’ abundance (36-39 %). The significant geographical, species and age differences have been detected in Borrelia infection rate of Ixodid ticks. Borrelia DNA have been detected considerably more often in taiga tick (the main vector of Ixodid tick borrelioses in Siberia) and in its nymphs more often, than in adult ticks. There was no difference in the infection rate of male and female ticks, and also between ticks, collected from the vegetation and from human and animals. The ratio og genotyped Borrelia species had been as follows: 64.2 % – B. garinii, 21,7 % – B. afzelii, 14,2 % – B. miyamotoi. Key words: Ixodid ticks, pathogenic Borrelia, PCR, genotyping, Baikal Region.

Tick-borne encephalitis (TBE) is transmissible viral disease widely common in temperate zone of Eurasia. ELISA and PCR are used for express identification of the vector’s infection, but the results of the two methods often do not agree. Aim of the work is comparative analysis for TBE virus of Ixodid ticks from nature using complex of methods, including ELISA, PCR, and isolation of the virus in laboratory mice. 18608 Ixodid ticks were collected during 2013-2019 in TBE natural foci of the Baikal Region. The ticks suspensions were examined individually, using ELISA (n=17610) and PCR (n=2999). Suckling mice were inoculated with the suspensions positive in the both tests. The TBEV antigen was found in 1.2 % of ticks in average. All ticks positive in ELISA were examined in PCR (Group 1). Randomly selected part of negative-ELISA samples were examined in PCR too (Group 2). The PCR results were positive in 68.9±3.13 % of the Group 1, with average Ct index 24.6±0.38. Positive results of PCR in Group 2 accounted for just 2.7±0.31 % with average Ct index 31.0±0.70. The average Ct margin of the Groups 1 and 2 is statistically significant (p < 0.001; df = 118). Isolation of strains was significantly more successful in Group 1 (21.7±2.77 %), than in Group 2 (8.2±5.26 %; p < 0.05; df = 50). ELISA is more useful for examining large amounts of ticks. To get a more complex picture about epidemically dangerous part of the vectors in TBE natural foci, the results of the two express-methods is better to sum. The isolation of the virus is useful to carry out of the samples positive in ELISA and PCR concurrently.