Marangoni convection plays an important role in hydrodynamics of evaporating liquid films and sessile drops. Evaporation of liquid films induces unsteady nonuniform temperature distribution across the liquid layer and in a substrate. If the substrate is composed of parts with different thermal properties, the interface temperature distribution becomes non-uniform, leading to appearance of Marangoni stresses, convective vortices, and film deformation. In this article, a model describing evaporation, Marangoni effect and interface dynamics of liquid films on composite substrates is developed. The film dynamics is described in the framework of long-wave theory. The unsteady heat conduction in the substrate is described using the Laplace transform method for semi-infinite substrates and using the separation of variables technique for substrates of finite thickness. The non-uniformity of substrate thermal properties has a pronounced effect on film dynamics.